Marine Life & Processes: VIMS Journal Articles

The following list is based on a search of VIMS-authored research articles from Thomson Reuters' Web of Science© using the keyword search terms ecology, biodiversity, harmful algal blooms (HABs), invasive species, or jellyfish. The list excludes oysters, blue crabs, or sea grass as title terms, and is updated at least biannually.

  1. Walles, B., et al., 2015. Demography of the ecosystem engineer Crassostrea gigas, related to vertical reef accretion and reef persistence. Estuarine Coastal and Shelf Science, 154: p. 224-233. http://doi.org/10.1016/j.ecss.2015.01.006
  2. Lefcheck, J.S., V.A.G. Bastazini, and J.N. Griffin, 2015. Choosing and using multiple traits in functional diversity research. Environmental Conservation, 42(2): p. 104-107. http://doi.org/10.1017/S0376892914000307
  3. Isdell, R.E., et al., 2015. Effects of terrestrial-aquatic connectivity on an estuarine turtle. Diversity and Distributions, 21(6): p. 643-653. http://doi.org/10.1111/ddi.12289
  4. Guilhaumon, F., et al., 2015. Representing taxonomic, phylogenetic and functional diversity: new challenges for Mediterranean marine-protected areas. Diversity and Distributions, 21(2): p. 175-187. http://doi.org/10.1111/ddi.12280
  5. Granger, V., et al., 2015. Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea. Progress in Oceanography, 130: p. 65-74. http://doi.org/10.1016/j.pocean.2014.10.002
  6. Granger, V., et al., 2015. Mapping diversity indices: not a trivial issue. Methods in Ecology and Evolution, 6(6): p. 688-696. http://doi.org/10.1111/2041-210x.12357
  7. Gillett, D.J., et al., 2015. Effect of ecological group classification schemes on performance of the AMBI benthic index in US coastal waters. Ecological Indicators, 50: p. 99-107. http://doi.org/10.1016/j.ecolind.2014.11.005
  8. Del Raye, G. and K.C. Weng, 2015. An aerobic scope-based habitat suitability index for predicting the effects of multi-dimensional climate change stressors on marine teleosts. Deep-Sea Research Part Ii-Topical Studies in Oceanography, 113: p. 280-290. http://doi.org/10.1016/j.dsr2.2015.01.014
  9. Buchheister, A. and R.J. Latour, 2015. Diets and trophic-guild structure of a diverse fish assemblage in Chesapeake Bay, USA. Journal of Fish Biology, 86(3): p. 967-992. http://doi.org/10.1111/jfb.12621
  10. Sweetman, C.J., et al., 2014. Diet composition of Bathylagus euryops (Osmeriformes: Bathylagidae) along the northern Mid-Atlantic Ridge. Deep-Sea Research Part I-Oceanographic Research Papers, 92: p. 107-114. http://doi.org/10.1016/j.dsr.2014.06.010
  11. Stone, J.P. and D.K. Steinberg, 2014. Long-term time-series study of salp population dynamics in the Sargasso Sea. Marine Ecology Progress Series, 510: p. 111-127. http://doi.org/10.3354/meps10985
  12. Sipler, R.E., et al., 2014. Bacteriocidal effects of brevetoxin on natural microbial communities. Harmful Algae, 38: p. 101-109. http://doi.org/10.1016/j.hal.2014.04.009
  13. Seitz, R.D., 2014. Value of coastal habitats for exploited species: introduction to a theme set of articles. Ices Journal of Marine Science, 71(3): p. 636-637. http://doi.org/10.1093/icesjms/fst180
  14. Mulholland, M.R., et al., 2014. Contribution of diazotrophy to nitrogen inputs supporting Karenia brevis blooms in the Gulf of Mexico. Harmful Algae, 38: p. 20-29. http://doi.org/10.1016/j.hal.2014.04.004
  15. Malek, A.J., J.S. Collie, and J. Gartland, 2014. Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem. Estuarine Coastal and Shelf Science, 147: p. 1-10. http://doi.org/10.1016/j.ecss.2014.05.028
  16. Lefcheck, J.S., et al., 2014. Epifaunal invertebrates as predators of juvenile bay scallops (Argopecten irradians). Journal of Experimental Marine Biology and Ecology, 454: p. 18-25. http://doi.org/10.1016/j.jembe.2014.01.014
  17. Lefcheck, J.S., et al., 2014. Dimensions of biodiversity in Chesapeake Bay demersal fishes: patterns and drivers through space and time. Ecosphere, 5(2). http://doi.org/10.1890/Es13-00284.1
  18. Lawless, A.S. and R.D. Seitz, 2014. Effects of shoreline stabilization and environmental variables on benthic infaunal communities in the Lynnhaven River System of Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 457: p. 41-50. http://doi.org/10.1016/j.jembe.2014.03.010
  19. Kennish, M.J., M.J. Brush, and K.A. Moore, 2014. Drivers of Change in Shallow Coastal Photic Systems: An Introduction to a Special Issue. Estuaries and Coasts, 37(1): p. S3-S19. http://doi.org/10.1007/s12237-014-9779-4
  20. Heil, C.A., et al., 2014. Blooms of Karenia brevis (Davis) G. Hansen & O. Moestrup on the West Florida Shelf: Nutrient sources and potential management strategies based on a multi-year regional study. Harmful Algae, 38: p. 127-140. http://doi.org/10.1016/j.hal.2014.07.016
  21. Fabrizio, M.C., J.P. Manderson, and J.P. Pessutti, 2014. Home range and seasonal movements of Black Sea Bass (Centropristis striata) during their inshore residency at a reef in the mid-Atlantic Bight. Fishery Bulletin, 112(1): p. 82-97.
  22. Dulvy, N.K., et al., 2014. Extinction risk and conservation of the world's sharks and rays. Elife, 3. ARTN e00590 http://doi.org/10.7554/eLife.00590
  23. Dolan, T.W., M.J. Butler, and J.D. Shields, 2014. Host behavior alters spiny lobster-viral disease dynamics: a simulation study. Ecology, 95(8): p. 2346-2361.
  24. Bronk, D.A., et al., 2014. Nitrogen uptake and regeneration (ammonium regeneration, nitrification and photoproduction) in waters of the West Florida Shelf prone to blooms of Karenia brevis. Harmful Algae, 38: p. 50-62. http://doi.org/10.1016/j.hal.2014.04.007
  25. Bird, T.J., et al., 2014. Statistical solutions for error and bias in global citizen science datasets. Biological Conservation, 173: p. 144-154. http://doi.org/10.1016/j.biocon.2013.07.037
  26. Sturdivant, S.K., R.D. Seitz, and R.J. Diaz, 2013. Effects of seasonal hypoxia on macrobenthic production and function in the Rappahannock River, Virginia, USA. Marine Ecology Progress Series, 490: p. 53-68. http://doi.org/10.3354/Meps10470
  27. Stuart-Smith, R.D., et al., 2013. Integrating abundance and functional traits reveals new global hotspots of fish diversity. Nature, 501(7468): p. 539-+. http://doi.org/10.1038/Nature12529
  28. Sipler, R.E., et al., 2013. Trichodesmium-derived dissolved organic matter is a source of nitrogen capable of supporting the growth of toxic red tide Karenia brevis. Marine Ecology Progress Series, 483: p. 31-45. http://doi.org/10.3354/Meps10258
  29. Silva, N.J., K.W. Tang, and R.M. Lopes, 2013. Effects of microalgal exudates and intact cells on subtropical marine zooplankton. Journal of Plankton Research, 35(4): p. 855-865. http://doi.org/10.1093/Plankt/Fbt026
  30. Shields, J.D., 2013. Complex etiologies of emerging diseases in lobsters (Homarus americanus) from Long Island Sound. Canadian Journal of Fisheries and Aquatic Sciences, 70(11): p. 1576-1587. http://doi.org/10.1139/Cjfas-2013-0050
  31. Schab, C.M., et al., 2013. Return of the Native: Historical Comparison of Invasive and Indigenous Crab Populations near the Mouth of Delaware Bay. Journal of Shellfish Research, 32(3): p. 751-758. http://doi.org/10.2983/035.032.0318
  32. Lefcheck, J.S., et al., 2013. Physiological effects of diet mixing on consumer fitness: a meta-analysis. Ecology, 94(3): p. 565-572.
  33. Howard, J., et al., 2013. Oceans and Marine Resources in a Changing Climate. Oceanography and Marine Biology: An Annual Review, Vol 51, 51: p. 71-192.
  34. Fabrizio, M.C., J.P. Manderson, and J.P. Pessutti, 2013. Habitat associations and dispersal of black sea bass from a mid-Atlantic Bight reef. Marine Ecology Progress Series, 482: p. 241-253. http://doi.org/10.3354/Meps10302
  35. Duffy, J.E., et al., 2013. Decline and Local Extinction of Caribbean Eusocial Shrimp. Plos One, 8(2). DOI 10.1371/journal.pone.0054637
  36. Duffy, J.E., et al., 2013. Envisioning a Marine Biodiversity Observation Network. Bioscience, 63(5): p. 350-361. http://doi.org/10.1525/Bio.2013.63.5.8
  37. Capossela, K.M., M.C. Fabrizio, and R.W. Brill, 2013. Migratory and within-estuary behaviors of adult Summer Flounder (Paralichthys dentatus) in a lagoon system of the southern mid-Atlantic Bight. Fishery Bulletin, 111(2): p. 189-201. http://doi.org/10.7755/Fb.111.2.6
  38. Bilkovic, D.M. and M.M. Mitchell, 2013. Ecological tradeoffs of stabilized salt marshes as a shoreline protection strategy: Effects of artificial structures on macrobenthic assemblages. Ecological Engineering, 61: p. 469-481. http://doi.org/10.1016/j.ecoleng.2013.10.011
  39. Woodland, R.J., et al., 2012. Comparing the nursery role of inner continental shelf and estuarine habitats for temperate marine fishes. Estuarine Coastal and Shelf Science, 99: p. 61-73. http://doi.org/10.1016/J.Ecss.2011.12.019
  40. Steinberg, D.K., M.W. Lomas, and J.S. Cope, 2012. Long-term increase in mesozooplankton biomass in the Sargasso Sea: Linkage to climate and implications for food web dynamics and biogeochemical cycling. Global Biogeochemical Cycles, 26. http://doi.org/10.1029/2010gb004026
  41. Shields, E.C., K.A. Moore, and D.B. Parrish, 2012. Influences of Salinity and Light Availability on Abundance and Distribution of Tidal Freshwater and Oligohaline Submersed Aquatic Vegetation. Estuaries and Coasts, 35(2): p. 515-526. http://doi.org/10.1007/S12237-011-9460-0
  42. Ribeiro, F. and P.M. Leunda, 2012. Non-native fish impacts on Mediterranean freshwater ecosystems: current knowledge and research needs. Fisheries Management and Ecology, 19(2): p. 142-156. http://doi.org/10.1111/J.1365-2400.2011.00842.X
  43. Relles, N.J., D.O.B. Jones, and D.R. Mishra, 2012. Creating Landscape-Scale Maps of Coral Reef Cover for Marine Reserve Management from High-Resolution Multispectral Remote Sensing. Giscience & Remote Sensing, 49(2): p. 251-274. http://doi.org/10.2747/1548-1603.49.2.251
  44. Poore, A.G.B., et al., 2012. Global patterns in the impact of marine herbivores on benthic primary producers. Ecology Letters, 15(8): p. 912-922. http://doi.org/10.1111/J.1461-0248.2012.01804.X
  45. Naeem, S., J.E. Duffy, and E. Zavaleta, 2012. The Functions of Biological Diversity in an Age of Extinction. Science, 336(6087): p. 1401-1406. http://doi.org/10.1126/Science.1215855
  46. Mullineaux, L.S., et al., 2012. Detecting the Influence of Initial Pioneers on Succession at Deep-Sea Vents. Plos One, 7(12). http://doi.org/10.1371/journal.pone.0050015
  47. Lynch, P.D., K.W. Shertzer, and R.J. Latour, 2012. Performance of methods used to estimate indices of abundance for highly migratory species. Fisheries Research, 125: p. 27-39. http://doi.org/10.1016/J.Fishres.2012.02.005
  48. Hultgren, K.M. and J.E. Duffy, 2012. Phylogenetic community ecology and the role of social dominance in sponge-dwelling shrimp. Ecology Letters, 15(7): p. 704-713. http://doi.org/10.1111/J.1461-0248.2012.01788.X
  49. Wu, X.W., et al., 2011. A brown-world cascade in the dung decomposer food web of an alpine meadow: effects of predator interactions and warming. Ecological Monographs, 81(2): p. 313-328.
  50. Tang, K.W., et al., 2011. Metazooplankton community structure, feeding rate estimates, and hydrography in a meltwater-influenced Greenlandic fjord. Marine Ecology-Progress Series, 434: p. 77-99. http://doi.org/10.3354/Meps09188
  51. Sun, S.C., et al., 2011. A brown-world cascade in the dung decomposer food web of an alpine meadow: effects of predator interactions and warming. Ecological Monographs, 81(2): p. 313-328.
  52. Saba, G.K., et al., 2011. The effects of harmful algal species and food concentration on zooplankton grazer production of dissolved organic matter and inorganic nutrients. Harmful Algae, 10(3): p. 291-303. http://doi.org/10.1016/j.hal.2010.11.003
  53. Morse, R.E., et al., 2011. Environmental and Physical Controls on the Formation and Transport of Blooms of the Dinoflagellate Cochlodinium polykrikoides Margalef in the Lower Chesapeake Bay and Its Tributaries. Estuaries and Coasts, 34(5): p. 1006-1025. http://doi.org/10.1007/S12237-011-9398-2
  54. Lynch, P.D., J.E. Graves, and R.J. Latour, 2011. Challenges in the Assessment and Management of Highly Migratory Bycatch Species: A Case Study of the Atlantic Marlins. Sustainable Fisheries: Multi-Level Approaches to a Global Problem: p. 197-225.
  55. Lynch, P.D., M.J. Brush, and R.J. Latour, 2011. Simulated Short-Term Impacts of the Atlantic Menhaden Reduction Fishery on Chesapeake Bay Water Quality. North American Journal of Fisheries Management, 31(1): p. 70-78. http://doi.org/10.1080/02755947.2011.559850
  56. Long, Z.T., J.F. Bruno, and J.E. Duffy, 2011. Food chain length and omnivory determine the stability of a marine subtidal food web. Journal of Animal Ecology, 80(3): p. 586-594. http://doi.org/10.1111/J.1365-2656.2010.01800.X
  57. Fisher, R.A., G.C. Call, and R.D. Grubbs, 2011. Cownose Ray (Rhinoptera Bonasus) Predation Relative to Bivalve Ontogeny. Journal of Shellfish Research, 30(1): p. 187-196. http://doi.org/10.2983/035.030.0126
  58. Filippino, K.C., et al., 2011. The Bioavailability of Effluent-derived Organic Nitrogen along an Estuarine Salinity Gradient. Estuaries and Coasts, 34(2): p. 269-280. http://doi.org/10.1007/s12237-010-9314-1
  59. Condon, R.H., et al., 2011. Jellyfish blooms result in a major microbial respiratory sink of carbon in marine systems. Proceedings of the National Academy of Sciences of the United States of America, 108(25): p. 10225-10230. http://doi.org/10.1073/pnas.1015782108
  60. Cardinale, B.J., et al., 2011. The Functional Role of Producer Diversity in Ecosystems. American Journal of Botany, 98(3): p. 572-592. http://doi.org/10.3732/ajb.1000364
  61. Buchheister, A. and R.J. Latour, 2011. Trophic Ecology of Summer Flounder in Lower Chesapeake Bay Inferred from Stomach Content and Stable Isotope Analyses. Transactions of the American Fisheries Society, 140(5): p. 1240-1254. http://doi.org/10.1080/00028487.2011.618364
  62. Bilkovic, D.M., 2011. Response of Tidal Creek Fish Communities to Dredging and Coastal Development Pressures in a Shallow-Water Estuary. Estuaries and Coasts, 34(1): p. 129-147. http://doi.org/10.1007/s12237-010-9334-x
  63. Behringer, D.C., et al., 2011. Review of Panulirus argus virus 1-a decade after its discovery. Diseases of Aquatic Organisms, 94(2): p. 153-160. http://doi.org/10.3354/Dao02326
  64. Teixeira, H., et al., 2010. Assessing coastal benthic macrofauna community condition using best professional judgement - Developing consensus across North America and Europe. Marine Pollution Bulletin, 60(4): p. 589-600. http://doi.org/10.1016/J.Marpolbul.2009.11.005
  65. Sobocinski, K.L., J.R. Cordell, and C.A. Simenstad, 2010. Effects of Shoreline Modifications on Supratidal Macroinvertebrate Fauna on Puget Sound, Washington Beaches. Estuaries and Coasts, 33(3): p. 699-711. http://doi.org/10.1007/S12237-009-9262-9
  66. Orth, R.J., et al., 2010. Long-Term Trends in Submersed Aquatic Vegetation (SAV) in Chesapeake Bay, USA, Related to Water Quality. Estuaries and Coasts, 33(5): p. 1144-1163. http://doi.org/10.1007/S12237-010-9311-4
  67. Hoffmann, M., et al., 2010. The Impact of Conservation on the Status of the World's Vertebrates. Science, 330(6010): p. 1503-1509. http://doi.org/10.1126/Science.1194442
  68. Hilton, E.J., G.D. Johnson, and W.F. Smith-Vaniz, 2010. Osteology and Systematics of Parastromateus niger (Perciformes: Carangidae), with Comments on the Carangid Dorsal Gill-Arch Skeleton. Copeia, (2): p. 312-333. http://doi.org/10.1643/Ci-09-118
  69. Conrath, C.L. and J.A. Musick, 2010. Residency, space use and movement patterns of juvenile sandbar sharks (Carcharhinus plumbeus) within a Virginia summer nursery area. Marine and Freshwater Research, 61(2): p. 223-235. http://doi.org/10.1071/Mf09078
  70. Condon, R.H., D.K. Steinberg, and D.A. Bronk, 2010. Production of dissolved organic matter and inorganic nutrients by gelatinous zooplankton in the York River estuary, Chesapeake Bay. Journal of Plankton Research, 32(2): p. 153-170. http://doi.org/10.1093/Plankt/Fbp109
  71. Mansfield, K.L., et al., 2009. Satellite tracking reveals a dichotomy in migration strategies among juvenile loggerhead turtles in the Northwest Atlantic. Marine Biology, 156(12): p. 2555-2570. http://doi.org/10.1007/S00227-009-1279-X
  72. Finkl, C.W. and C.H. Hobbs, 2009. Mining Sand on the Continental Shelf of the Atlantic and Gulf Coasts of the US. Marine Georesources & Geotechnology, 27(3): p. 230-253. http://doi.org/10.1080/10641190902906067
  73. Brooks, R., et al., 2009. A Stream-Wetland-Riparian (SWR) index for assessing condition of aquatic ecosystems in small watersheds along the Atlantic slope of the eastern US. Environmental Monitoring and Assessment, 150(1-4): p. 101-117. http://doi.org/10.1007/S10661-008-0673-Z
  74. Aunins, A. and J.E. Olney, 2009. Migration and Spawning of American Shad in the James River, Virginia. Transactions of the American Fisheries Society, 138(6): p. 1392-1404. http://doi.org/10.1577/T08-160.1
  75. Wilber, D.H., et al., 2008. Responses of Benthic Infauna to Large-Scale Sediment Disturbance in Corpus Christi Bay, Texas. Journal of Experimental Marine Biology and Ecology, 365(1): p. 13-22. http://doi.org/10.1016/J.Jembe.2008.07.029
  76. Saba, V.S., et al., 2008. An oceanographic context for the foraging ecology of eastern Pacific leatherback turtles: Consequences of ENSO. Deep-Sea Research Part I-Oceanographic Research Papers, 55(5): p. 646-660. http://doi.org/10.1016/J.Dsr.2008.02.006
  77. Puente, A. and R.J. Diaz, 2008. Is it possible to assess the ecological status of highly stressed natural estuarine environments using macro invertebrates indices? Marine Pollution Bulletin, 56(11): p. 1880-1889. http://doi.org/10.1016/J.Marpolbul.2008.07.016
  78. Latour, R.J., et al., 2008. The trophic dynamics of summer flounder (Paralichthys dentatus) in Chesapeake Bay. Fishery Bulletin, 106(1): p. 47-57.
  79. Hoffman, J.C., D.A. Bronk, and J.E. Olney, 2008. Organic matter sources supporting lower food web production in the tidal freshwater portion of the York River estuary, Virginia. Estuaries and Coasts, 31(5): p. 898-911. http://doi.org/10.1007/S12237-008-9073-4
  80. Hobbs, C.H., C.B. Landry, and J.E. Perry, 2008. Assessing Anthropogenic and Natural Impacts on Ghost Crabs (Ocypode quadrata) at Cape Hatteras National Seashore, North Carolina. Journal of Coastal Research, 24(6): p. 1450-1458. http://doi.org/10.2112/07-0856.1
  81. Hershner, C. and K.J. Havens, 2008. Managing Invasive Aquatic Plants in a Changing System: Strategic Consideration of Ecosystem Services. Conservation Biology, 22(3): p. 544-550.
  82. Dulvy, N.K., et al., 2008. You can swim but you can't hide: the global status and conservation of oceanic pelagic sharks and rays. Aquatic Conservation-Marine and Freshwater Ecosystems, 18(5): p. 459-482. http://doi.org/10.1002/Aqc.975
  83. Duarte, C.M., et al., 2008. The charisma of coastal ecosystems: Addressing the imbalance. Estuaries and Coasts, 31(2): p. 233-238. http://doi.org/10.1007/S12237-008-9038-7
  84. Douglass, J.G., et al., 2008. Correction of statistical miscalculation slightly alters conclusions about diversity effects for Douglass et al. (2008). Ecology Letters, 11(9): p. E9-10.
  85. Douglass, J.G., J.E. Duffy, and J.F. Bruno, 2008. Herbivore and predator diversity interactively affect ecosystem properties in an experimental marine community. Ecology Letters, 11(6): p. 598-608.
  86. Diaz, R.J., et al., 2008. Long-term Trends of Benthic Habitats Related to Reduction in Wastewater Discharge to Boston Harbor. Estuaries and Coasts, 31(6): p. 1184-1197. http://doi.org/10.1007/S12237-008-9094-Z
  87. Conrath, C.L. and J.A. Musick, 2008. Investigations into depth and temperature habitat utilization and overwintering grounds of juvenile sandbar sharks, Carcharhinus plumbeus: the importance of near shore North Carolina waters. Environmental Biology of Fishes, 82(2): p. 123-131. http://doi.org/10.1007/S10641-007-9263-0
  88. Bruno, J.F., et al., 2008. Relative and interactive effects of plant and grazer richness in a benthic marine community. Ecology, 89(9): p. 2518-2528.
  89. Bromage, E., W.C. Long, and S. Kaattari, 2008. Biomarkers of oogenesis in Macoma balthica determined by subtractive immunization. Aquatic Biology, 3(2): p. 139-145. http://doi.org/10.3354/Ab00078
  90. Borja, A., et al., 2008. Assessing estuarine benthic quality conditions in Chesapeake Bay: A comparison of three indices. Ecological Indicators, 8(4): p. 395-403. http://doi.org/10.1016/J.Ecolind.2007.05.003
  91. Bilkovic, D.M. and M.M. Roggero, 2008. Effects of coastal development on nearshore estuarine nekton communities. Marine Ecology-Progress Series, 358: p. 27-39. http://doi.org/10.3354/Meps07279
  92. Rudders, D. and R. Fisher. Evolution of Gear Design to Improve the Size Selectivity of Black Sea Bass, Centropristis striata, Habitat Traps. in 137th Annual Meeting of the American Fisheries Society (AFS 2007). 2007. San Francisco, California (USA).
  93. Long, Z.T., J.F. Bruno, and J.E. Duffy, 2007. Biodiversity mediates productivity through different mechanisms at adjacent trophic levels. Ecology, 88(11): p. 2821-2829.
  94. Lawson, S.E., et al., 2007. Wind-driven sediment suspension controls light availability in a shallow coastal lagoon. Estuaries and Coasts, 30(1): p. 102-112.
  95. Horodysky, A.Z., et al., 2007. Habitat utilization and vertical movements of white marlin (Tetrapturus albidus) released from commercial and recreational fishing gears in the western North Atlantic Ocean: inferences from short duration pop-up archival satellite tags. Fisheries Oceanography, 16(3): p. 240-256.
  96. Henderson, M., M. Fabrizio, and J. Lucy. Monitoring Localized Movements and Habitat use of Summer Flounder in the Chesapeake Bay using Passive Acoustic Telemetry. in 137th Annual Meeting of the American Fisheries Society (AFS 2007). 2007. San Francisco, California (USA).
  97. Harwell, M.C. and J.M. Rhode, 2007. Effects of edge/interior and patch structure on reproduction in Zostera marina L. in Chesapeake Bay, USA. Aquatic Botany, 87(2): p. 147-154.
  98. Gillett, D.J., A.F. Holland, and D.A. Sanger, 2007. On the ecology of oligochaetes: Monthly variation of community composition and environmental characteristics in two south Carolina tidal creeks. Estuaries and Coasts, 30(2): p. 238-252.
  99. Fabrizio, M.C. and J.P. Pessutti, 2007. Long-term effects and recovery from surgical implantation of dummy transmitters in two marine fishes. Journal of Experimental Marine Biology and Ecology, 351(1-2): p. 243-254.
  100. Ellis, J.K. and J.A. Musick, 2007. Ontogenetic changes in the diet of the sandbar shark, Carcharhinus plumbeus, in lower Chesapeake Bay and Virginia (USA) coastal waters. Environmental Biology of Fishes, 80(1): p. 51-67.
  101. Duffy, J.E., et al., 2007. The functional role of biodiversity in ecosystems: incorporating trophic complexity. Ecology Letters, 10(6): p. 522-538.
  102. Bronk, D.A., et al., 2007. DON as a source of bioavailable nitrogen for phytoplankton. Biogeosciences, 4(3): p. 283-296.
  103. Tenore, K.R., et al., 2006. Characterizing the role benthos plays in large coastal seas and estuaries: A modular approach. Journal of Experimental Marine Biology and Ecology, 330(1): p. 392-402.
  104. Seitz, R.D., et al., 2006. Influence of shallow-water habitats and shoreline development on abundance, biomass, and diversity of benthic prey and predators in Chesapeake Bay. Marine Ecology-Progress Series, 326: p. 11-27.
  105. Olney, J.E., et al., 2006. Migratory behavior of American shad in the York River, Virginia, with implications for estimating in-river exploitation from tag recovery data. Transactions of the American Fisheries Society, 135(4): p. 889-896.
  106. Nichols, J.D., J.E. Perry, and D.A. DeBerry, 2006. Using a floristic quality assessment technique to evaluate plant community integrity of forested wetlands in Southeastern Virginia. Natural Areas Journal, 26(4): p. 360-369.
  107. Lin, J., et al., 2006. Dissolved oxygen stratification in two micro-tidal partially-mixed estuaries. Estuarine Coastal and Shelf Science, 70(3): p. 423-437.
  108. France, K.E. and J.E. Duffy, 2006. Consumer diversity mediates invasion dynamics at multiple trophic levels. Oikos, 113(3): p. 515-529.
  109. France, K.E. and J.E. Duffy, 2006. Diversity and dispersal interactively affect predictability of ecosystem function. Nature, 441(7097): p. 1139-1143.
  110. Duffy, J.E. and J.J. Stachowicz, 2006. Why biodiversity is important to oceanography: potential roles of genetic, species, and trophic diversity in pelagic ecosystem processes. Marine Ecology-Progress Series, 311: p. 179-189.
  111. Diaz, R.J. and J.H. Trefry, 2006. Comparison of sediment profile image data with profiles of oxygen and Eh from sediment cores. Journal of Marine Systems, 62(3-4): p. 164-172.
  112. Bruno, J.F., et al., 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos, 115(1): p. 170-178.
  113. Varnell, L.M. and C.S. Hardaway, 2005. A risk assessment approach to management of estuarine dunefields. Ocean & Coastal Management, 48(9-10): p. 767-781.
  114. McIntyre, P.B., et al., 2005. Individual- and assemblage-level effects of anthropogenic sedimentation on snails in Lake Tanganyika. Conservation Biology, 19(1): p. 171-181.
  115. Mann, R., et al., 2005. Northern quahog (hard clam) Mercenaria mercenaria abundance and habitat use in Chesapeake Bay. Journal of Shellfish Research, 24(2): p. 509-516.
  116. Gillett, D.J., A.F. Holland, and D.M. Sanger, 2005. Secondary production of a dominant oligochaete (Monopylephorus rubroniveus) in the tidal creeks of South Carolina and its relation to ecosystem characteristics. Limnology and Oceanography, 50(2): p. 566-577.
  117. Duffy, J.E., J.P. Richardson, and K.E. France, 2005. Ecosystem consequences of diversity depend on food chain length in estuarine vegetation. Ecology Letters, 8(3): p. 301-309.
  118. Bruno, J.F., et al., 2005. Effects of macroalgal species identity and richness on primary production in benthic marine communities. Ecology Letters, 8(11): p. 1165-1174.
  119. Bilkovic, D.M., et al., 2005. Evaluating nearshore communities as indicators of ecosystem health. Estuarine Indicators: p. 365-379.
  120. Ward, M.E., J.D. Shields, and C.L. Van Dover, 2004. Parasitism in species of Bathymodiolus (Bivalvia : Mytilidae) mussels from deep-sea seep and hydrothermal vents. Diseases of Aquatic Organisms, 62(1-2): p. 1-16.
  121. Holland, A.F., et al., 2004. Linkages between tidal creek ecosystems and the landscape and demographic attributes of their watersheds. Journal of Experimental Marine Biology and Ecology, 298(2): p. 151-178.
  122. Diaz, R.J., M. Solan, and R.M. Valente, 2004. A review of approaches for classifying benthic habitats and evaluating habitat quality. Journal of Environmental Management, 73(3): p. 165-181.
  123. Carlsson, J., et al., 2004. Migration of landlocked brown trout in two Scandinavian streams as revealed from trap data. Ecology of Freshwater Fish, 13(3): p. 161-167.
  124. Walter, J.F., et al., 2003. Atlantic coast feeding habits of striped bass: a synthesis supporting a coast-wide understanding of trophic biology. Fisheries Management and Ecology, 10(5): p. 349-360.
  125. Turnipseed, M., et al., 2003. Diversity in mussel beds at deep-sea hydrothermal vents and cold seeps. Ecology Letters, 6(6): p. 518-523.
  126. Duffy, J.E., 2003. Biodiversity loss, trophic skew and ecosystem functioning. Ecology Letters, 6(8): p. 680-687.
  127. Diaz, R.J., G.R. Cutter, and D.M. Dauer, 2003. A comparison of two methods for estimating the status of benthic habitat quality in the Virginia Chesapeake Bay. Journal of Experimental Marine Biology and Ecology, 285: p. 371-381.
  128. Diaz, R.J., G.R. Cutter, and K.W. Able, 2003. The importance of physical and biogenic structure to juvenile fishes on the shallow inner continental shelf. Estuaries, 26(1): p. 12-20.
  129. Conrath, C.L. and J.A. Musick, 2002. Reproductive biology of the smooth dogfish, Mustelus canis, in the northwest Atlantic Ocean. Environmental Biology of Fishes, 64(4): p. 367-377.
  130. Buzzelli, C.P., et al., 2002. Estimating the spatial extent of bottom-water hypoxia and habitat degradation in a shallow estuary. Marine Ecology-Progress Series, 230: p. 103-112.
  131. Bartholomew, A., 2002. Total cover and cover quality: predicted and actual effects on a predator's foraging success. Marine Ecology-Progress Series, 227: p. 1-9.
  132. Seitz, R.D., et al., 2001. Density-dependent predation, habitat variation, and the persistence of marine bivalve prey. Ecology, 82(9): p. 2435-2451.
  133. Parker, J.D., J.E. Duffy, and R.J. Orth, 2001. Plant species diversity and composition: experimental effects on marine epifaunal assemblages. Marine Ecology-Progress Series, 224: p. 55-67.
  134. Lipcius, R.N., W.T. Stockhausen, and D.B. Eggleston, 2001. Marine reserves for Caribbean spiny lobster: empirical evaluation and theoretical metapopulation recruitment dynamics. Marine and Freshwater Research, 52(8): p. 1589-1598.
  135. Best, E.P.H., et al., 2001. Modeling submersed macrophyte growth in relation to underwater light climate: modeling approaches and application potential. Hydrobiologia, 444(1-3): p. 43-70.
  136. Beck, M.W., et al., 2001. The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates. Bioscience, 51(8): p. 633-641.
  137. Stockhausen, W.T., R.N. Lipcius, and B.M. Hickey, 2000. Joint effects of larval dispersal, population regulation, marine reserve design, and exploitation on production and recruitment in the Caribbean spiny lobster. Bulletin of Marine Science, 66(3): p. 957-990.
  138. Newman, M.C., et al., 2000. Applying species-sensitivity distributions in ecological risk assessment: Assumptions of distribution type and sufficient numbers of species. Environmental Toxicology and Chemistry, 19(2): p. 508-515.
  139. Bartholomew, A., R.J. Diaz, and G. Cicchetti, 2000. New dimensionless indices of structural habitat complexity: predicted and actual effects on a predator's foraging success. Marine Ecology-Progress Series, 206: p. 45-58.
  140. Wagner, C.M. and H.M. Austin, 1999. Correspondence between environmental gradients and summer littoral fish assemblages in low salinity reaches of the Chesapeake Bay, USA. Marine Ecology-Progress Series, 177: p. 197-212.
  141. Gelsleichter, J., J.A. Musick, and S. Nichols, 1999. Food habits of the smooth dogfish, Mustelus canis, dusky shark, Carcharhinus obscurus, Atlantic sharpnose shark, Rhizoprionodon terraenovae, and the sand tiger, Carcharias taurus, from the northwest Atlantic Ocean. Environmental Biology of Fishes, 54(2): p. 205-217.
  142. Buzzelli, C.P., R.L. Wetzel, and M.B. Meyers, 1999. A linked physical and biological framework to assess biogeochemical dynamics in a shallow estuarine ecosystem. Estuarine Coastal and Shelf Science, 49(6): p. 829-851.
  143. Moksnes, P.O., L. Pihl, and J. van Montfrans, 1998. Predation on postlarvae and juveniles of the shore crab Carcinus maenas: importance of shelter, size and cannibalism. Marine Ecology-Progress Series, 166: p. 211-225.
  144. Eggleston, D.B., J.J. Grover, and R.N. Lipcius, 1998. Ontogenetic diet shifts in Nassau grouper: Trophic linkages and predatory impact. Bulletin of Marine Science, 63(1): p. 111-126.
  145. Cutter, G.R. and R.J. Diaz, 1998. Novel optical remote sensing and ground-truthing of benthic habitat using the Burrow-Cutter-Diaz plowing sediment profile camera system (BCD sled). Journal of Shellfish Research, 17(5): p. 1443-1444.
  146. Havens, K.J., W.I. Priest, and H. Berquist, 1997. Investigation and long-term monitoring of Phragmites australis within Virginia's constructed wetland sites. Environmental Management, 21(4): p. 599-605.
  147. Eggleston, D.B., R.N. Lipcius, and J.J. Grover, 1997. Predator and shelter-size effects on coral reef fish and spiny lobster prey. Marine Ecology-Progress Series, 149(1-3): p. 43-59.
  148. Orth, R.J., et al. Interactions between benthic infauna and the transport and burial of Zostera marina seeds. in International Workshop on Seagrass Biology. 1996.    .
  149. Fishman, J.R. and R.J. Orth, 1996. Effects of predation on Zostera marina L seed abundance. Journal of Experimental Marine Biology and Ecology, 198(1): p. 11-26.
  150. Bonsdorff, E., et al., 1996. Characterization of soft-bottom benthic habitats of the Aland islands, northern Baltic sea. Marine Ecology-Progress Series, 142(1-3): p. 235-245.
  151. Varnell, L.M., K.J. Havens, and C. Hershner, 1995. Daily Variability in Abundance and Population Characteristics of Tidal Salt-Marsh Fauna. Estuaries, 18(2): p. 326-334.
  152. Varnell, L.M. and F.J. Havens, 1995. A Comparison of Dimension-Adjusted Catch Data Methods for Assessment of Fish and Crab Abundance in Intertidal Salt Marshes. Estuaries, 18(2): p. 319-325.
  153. Teixeira, R.L. and J.A. Musick, 1995. Trophic Ecology of 2 Congeneric Pipefishes (Syngnathidae) of the Lower York River, Virginia. Environmental Biology of Fishes, 43(3): p. 295-309.
  154. Havens, K.J., L.M. Varnell, and J.G. Bradshaw, 1995. An Assessment of Ecological Conditions in a Constructed Tidal Marsh and 2 Natural Reference Tidal Marshes in Coastal Virginia. Ecological Engineering, 4(2): p. 117-141.
  155. Mintz, J.D., et al., 1994. Survival of Juvenile Caribbean Spiny Lobster - Effects of Shelter Size, Geographic Location and Conspecific Abundance. Marine Ecology-Progress Series, 112(3): p. 255-266.
  156. Isaksson, I., L. Pihl, and J. Vanmontfrans, 1994. Eutrophication-Related Changes in Macrovegetation and Foraging of Young Cod (Gadus morhua L) - a Mesocosm Experiment. Journal of Experimental Marine Biology and Ecology, 177(2): p. 203-217.
  157. Lohse, D.P., 1993. The Effects of Substratum Type on the Population-Dynamics of 3 Common Intertidal Animals. Journal of Experimental Marine Biology and Ecology, 173(1): p. 133-154.
  158. Eggleston, D.B. and R.N. Lipcius, 1992. Shelter Selection by Spiny Lobster under Variable Predation Risk, Social Conditions, and Shelter Size. Ecology, 73(3): p. 992-1011.
  159. Thoney, D.A., 1991. Population Dynamics and Community Analysis of the Parasite Fauna of Juvenile Spot, Leiostomus xanthurus (Lacepede), and Atlantic Croaker, Micropogonias undulatus (Linnaeus), (Sciaenidae) in 2 Estuaries Along the Middle Atlantic Coast of the United-States. Journal of Fish Biology, 39(4): p. 515-534.
  160. Crabtree, R.E., J. Carter, and J.A. Musick, 1991. The Comparative Feeding Ecology of Temperate and Tropical Deep-Sea Fishes from the Western North-Atlantic. Deep-Sea Research Part a-Oceanographic Research Papers, 38(10): p. 1277-1298.