PUBLICATIONS from the
VIMS MARINE BIODIVERSITY LAB:
Bruno J.F., K.E. Boyer, J.E. Duffy, and S.C. Lee. In press. Relative and interactive effects of plant and grazer richness in a
benthic marine community. Ecology.
Douglass, J.G., J.E. Duffy, and J.F. Bruno. In press.
Herbivore and predator diversity interactively affect ecosystem properties in
marine macroalgal communities. Ecology Letters.
Rubenstein, D.R., B.V. McCleery,
and J.E. Duffy. In
press. Microsatellite development suggests evidence of polyploidy in
the social sponge-dwelling snapping shrimp Zuzalpheus brooksi. Molecular
Ecology Notes.
Tóth, E. and J.E. Duffy. In press. Influence of sociality on allometric growth and morphological differentiation in sponge-dwelling alpheid shrimp. Biological Journal of the Linnean Society.
Long, Z.T., J.F. Bruno, and J.E. Duffy. 2007. Biodiversity mediates productivity through different mechanisms at adjacent trophic levels. Ecology 88:2821-2829. (PDF)
Stachowicz, J.J., J.F. Bruno, and J.E. Duffy. 2007. Understanding the effects of marine biodiversity on community and ecosystem processes. Annual Review of Ecology, Evolution, and Systematics 38:739-766. (PDF)
Douglass, J.G., J.E. Duffy, A.C. Spivak,
and J.P. Richardson. 2007. Nutrient versus consumer control of community
structure in a
Spivak, A.C., E.A. Canuel, J.E. Duffy, and J.P. Richardson. 2007. Top-down and bottom-up controls on sediment organic matter composition in an experimental seagrass ecosystem. Limnology and Oceanography 52: 2595-2607. (PDF)
Ríos, R. and J.E. Duffy. 2007. A review of the sponge-dwelling snapping shrimp from Carrie Bow Cay, Belize, with description of Zuzalpheus, new genus, and six new species (Crustacea: Decapoda: Alpheidae). Zootaxa 1602:1-89. (PDF)
Duffy, J.E., B.J. Cardinale, K.E. France, P.B. McIntyre, E. Thébault, and M. Loreau. 2007. The functional role of biodiversity in food webs: Incorporating trophic complexity. Ecology Letters 10:522-538. (PDF)
Canuel, E.A., A.C. Spivak, E.J. Waterson*, and J.E. Duffy. 2007. Biodiversity and food web structure influence short-term accumulation of sediment organic matter in an experimental seagrass system. Limnology and Oceanography, 52: 590-602. (PDF)
Worm, B., E.B. Barbier, N. Beaumont, J.E. Duffy, C. Folke, B.S. Halpern, J.B.C. Jackson, H.K. Lotze, F. Micheli, S.R. Palumbi, E. Sala, K.A. Selkoe, J.J. Stachowicz, and R. Watson. 2006. Impacts of biodiversity loss on ocean ecosystem services. Science 314:787-790. (PDF)
Cardinale, B.J., Srivastava, D.S., Duffy, J.E., Wright, J.P., Downing, A.L., Sankaran, M. and Jouseau, C. 2006. Effects of biodiversity on the functioning of trophic groups and ecosystems: A meta-analysis. Nature 443:989-992. (featured as Must-Read [6.0] paper in Faculty of 1000) (PDF)
Bruno, J.F., S.C. Lee, J.S. Kertesz, R.C. Carpenter, Z.T. Long, and J.E. Duffy. 2006. Partitioning the effects of algal species identity and richness on benthic marine primary production. Oikos 115:170-178. (PDF)
Macdonald, K.S. III and J.E. Duffy. 2006. Two new
species of sponge-dwelling snapping shrimp from the Belizean Barrier Reef, with
a synopsis of the Synalpheus brooksi species complex.
Macdonald, K.S. III, R. Ríos, and J.E. Duffy. 2006. Biodiversity, host specificity, and dominance by eusocial species among sponge-dwelling alpheid shrimp on the Belize Barrier Reef. Diversity and Distributions 12:165-178 . (PDF)
Duffy, J.E. 2006. Biodiversity and the functioning of seagrass ecosystems. Marine Ecology Progress Series 311:233-250 (Invited). (PDF)
Duffy, J.E. and J.J. Stachowicz. 2006. Why biodiversity is important to oceanography: potential roles of genetic, species, and trophic diversity in pelagic ecosystem processes. Marine Ecology Progress Series 311:179-189. (PDF)
Duffy, J.E., J.P. Richardson, and K.E. France. 2005. Ecosystem consequences of diversity depend on food chain length in estuarine vegetation. Ecology Letters 8:301-309. (PDF)
Tóth, E. and J.E. Duffy. 2005. Coordinated
group response to nest intruders in social shrimp. Proceedings of the
Royal Society of
Macdonald, K.S. III, L. Yampolsky, and J.E. Duffy. 2005. Molecular and Morphological Evolution of the amphipod radiation of Lake Baikal. Molecular Phylogenetics and Evolution 35:323-343.
Valentine, J. and J.E. Duffy. 2005. The central
role of grazing in seagrass ecology. In: A.W.D. Larkum,
R.J. Orth, and C.M. Duarte (eds). Seagrass Biology: A Treatise. CRC Press,
Morrison, C. L., R. Ríos, and J.E. Duffy. 2004. Phylogenetic evidence for an ancient rapid radiation of Caribbean sponge-dwelling snapping shrimps (Synalpheus). Molecular phylogenetics and Evolution 30:563-58.
Rhode, J.M. and J.E. Duffy. 2004. Relationships between bed age, bed size, and genetic structure in Chesapeake Bay (Virginia, USA) eelgrass (Zostera marina L). Conservation Genetics 5: 1-11.
Rhode, J.M. and J.E. Duffy. 2004. Seed Production from the Mixed Mating System of Chesapeake Bay (USA) Eelgrass (Zostera marina L; Zosteraceae). American Journal of Botany 91:192-197.
Worm, B. and J.E. Duffy. 2003. Biodiversity,
productivity, and stability in real food webs. Trends in Ecology and
Evolution 18:628-632.
Duffy, J.E. 2003. Biodiversity
loss, trophic skew, and ecosystem functioning. Ecology Letters
6:680-687.
Duffy, J.E., E.A. Canuel, and J.P.
Richardson. 2003. Grazer
diversity and ecosystem functioning in seagrass beds. Ecology Letters 6:637-645.
Duffy, J.E. 2003. The
ecology and evolution of eusociality in sponge-dwelling shrimp. In: S. Higashi (editor). Genes,
behavior, and evolution in social insects.
Sagasti,
A., J.E. Duffy, and L.C. Schaffner.
2003. Estuarine epifauna recruit despite periodic hypoxic stress. Marine
Biology 142: 111-122.
Duffy, J.E. 2002. Biodiversity and
ecosystem function: the consumer connection. Oikos 99:201-219.
Duffy, J.E., C.L. Morrison, and K.S. Macdonald.
2002. Colony
defense and behavioral differentiation in the eusocial shrimp Synalpheus
regalis. Behavioral Ecology and Sociobiology 51:488-495.
Sagasti,
A., L.C. Schaffner, and J.E. Duffy.
2001. Effects of periodic hypoxia on mortality, feeding and predation in
an estuarine epifaunal community. Journal of
Experimental Marine Biology and Ecology 258:257-283.
31. Duffy, J.E. and A.M. Harvilicz.
2001. Species-specific
impacts of grazing amphipods in an eelgrass-bed community. Marine
Ecology Progress Series 223:201-211.
30.
Parker, J.D., J.E. Duffy, and R.J. Orth 2001. Experimental
tests of plant diversity effects on epifaunal diversity
and production in a temperate seagrass bed. Marine Ecology Progress
Series 224:55-67.
29. Duffy, J.E., K.S. Macdonald, J.M. Rhode, and J.D. Parker.
2001. Grazer
diversity, functional redundancy, and productivity in seagrass beds: an
experimental test. Ecology 82:2417-2434.
28. Duffy, J.E. and M.E. Hay. 2001. The ecology
and evolution of marine consumer-prey interactions. Pages
131-157 in: M.D. Bertness, M.E. Hay, and S.D.
Gaines, editors. Marine Community Ecology.
Sinauer
Associates,
27. Sagasti, A.,
L.C. Schaffner and J.E. Duffy.
2000. An epifaunal community thrives in an
estuary with brief hypoxic episodes. Estuaries 23:474-487.
26. Duffy, J.E.,
C.L. Morrison, and R. Ríos. 2000. Multiple origins of
eusociality among sponge-dwelling shrimps (Synalpheus). Evolution
54: 503-516.
25. Duffy,
J.E. and M.E. Hay. 2000. Strong impacts of
grazing amphipods on the organization of a benthic community. Ecological
Monographs 70:237-263.
24. Ríos,
R. and J.E. Duffy. 1999. Description of Synalpheus williamsi,
a new species of sponge-dwelling shrimp (Crustacea: Decapoda: Alpheidae), with
remarks on its first larval stage. Proceedings of the Biological Society of
23. Duffy,
J.E. and K.S. Macdonald. 1999. Colony
structure of the social snapping shrimp Synalpheus filidigitus
in Belize. Journal of Crustacean Biology 19:283-292.
22. Duffy,
J.E. 1998. On the frequency of eusociality in snapping
shrimps with description of a new eusocial species. Bulletin of
Marine Science 62:387-400.
21. Duffy,
J.E. 1996. Eusociality in a coral-reef shrimp. Nature
381:512-514.
20. Duffy,
J.E. 1996. Species
boundaries, specialization, and the radiation of sponge-dwelling alpheid shrimp.
Biological Journal of the Linnean Society 58:307-324.
19. Duffy,
J.E. 1996. Resource-associated population subdivision in a
symbiotic coral-reef shrimp. Evolution 50:360-373.
18. Duffy,
J.E. 1996. Synalpheus regalis, new species, a sponge-dwelling shrimp
from the Belize Barrier Reef, with comments on host specificity in Synalpheus.
Journal of Crustacean Biology 16:564-573.
17. Duffy, J.E. and M.E. Hay. 1994. Herbivore
resistance to seaweed chemical defense: the roles of mobility and predation
risk. Ecology 75:1304-1319.
16.
15. Duffy, J.E. 1993. Genetic population
structure in two tropical sponge-dwelling shrimps that differ in dispersal
potential. Marine Biology 90:127-138.
14. Duffy, J.E. 1992. Host use patterns and demography in a guild of
tropical sponge-dwelling shrimps. Marine Ecology Progress Series 90:127-138.
13. Duffy, J.E. and V.J. Paul. 1992. Prey nutritional quality and the
effectiveness of chemical defenses against tropical reef fishes. Oecologia90:333-339.
12. Duffy, J.E. and M.E. Hay. 1991. Host plants as food
and shelter: determinants of food choice in an herbivorous marine amphipod.
Ecology 72: 1286-1298.
11. Duffy, J.E. and M.E. Hay. 1991. Amphipods are not
all created equal: a reply to Bell. Ecology 72:354-358.
10. Duffy, J.E. 1990. Amphipods on seaweeds: partners or pests? Oecologia 83:267-276.
9. Duffy, J.E. and M.E. Hay. 1990. Seaweed adaptations to herbivory. BioScience 40:368-376.
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2. Paul, V.J., M.E. Hay, J.E. Duffy, W. Fenical, and K. Gustafson. 1987. Chemical defense in the seaweed Ochtodes secundiramea (Montagne) Howe (Rhodophyta): effects of its monoterpenoid components upon diverse coral-reef herbivores. Journal of Experimental Marine Biology and Ecology 114:249-260.
1. Duffy, J.E. and
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Last updated 7 February 2008